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Publications

2009
Chen Z, Vijayan S, Wilson MA, Barbieri R, Brown EN. Discrete- and continuous-time probabilistic models and algorithms for inferring neuronal UP/DOWN states. Neural Computation, 2009, March 29 Epub. PMID: 19323637

Scholz J, Triantafyllou C, Whitfield-Gabrieli S, Brown EN, Saxe R. Distinct regions of right temporo-parietal junction are selective for theory of mind and exogenous attention. PLoS One, 2009, 4(3):e4869. Epub 2009 Mar 17. PMID: 19290043

Koyama S, Eden UT, Brown EN, Kass RE. Bayesian decoding of neural spike trains. Annals of the Institute of Statistical Mathematics, 2009, In Press.

Chen Z, Brown EN, Barbieri R. Assessment of autonomic control and respiratory sinus arrhythmia using point process models of human heart beat dynamics. IEEE Transactions on Biomedical Engineering, 2009, In Press.

Wirth S, Avsar E, Chiu CC, Varun S, Smith AC, Brown EN, Suzuki WA. Trial outcome and associative learning signals in the monkey hippocampus. Neuron, 2009, 61(6): 930-940. PMID: 19324001

Purdon PL, Pierce ET, Bonmassar G, Walsh JL, Harrell PG, Kwo J, Deschler D, Barlow M, Merhar RC, Lamus C, Mullaly CM, Sullivan M, Maginnis S, Skoniecki D, Higgins H, Brown EN. Simultaneous electroencephalography and functional magnetic resonance imaging of general anesthesia. Annals of the New York Academy of Science, 2009, 1157: 61-70.

2008
Temereanca S, Brown EN, Simons DJ. Rapid changes in thalamic firing synchrony during repetitive whisker stimulation. Journal of Neuroscience, 2008, 28(44): 11153-11164. PMID: 18971458

Purdon PL, Pierce ET, Bonmassar G, Walsh JL, Harrell PG, Kwo J, Deschler D, Barlow M, Merhar RC, Lamus C, Mullaly CM, Sullivan M, Maginnis S, Skoniecki D, Higgins H, Brown EN. Simultaneous electroencephalography and functional magnetic resonance imaging of general anesthesia. Annals of the New York Academy of Science, 2008, In Press.

McCarthy MM, Brown EN, Kopell NK. Potential network mechanisms mediating electroencephalographic beta rhythm changes during propofol-induced paradoxical excitation. Journal of Neuroscience, 2008, 28(50): 13488-13504. PMID: 19074022

Yanike M, With S, Smith AC, Brown EN, Suzuki WA. Comparison of associative learning-related signals in the macaque perihinal cortex and hippocampus. Cerebral Cortex, 2008, October 20. PMID: 19074022

Molins A, Stufflebeam SM, Brown EN, Hämäläinen MS. Quantification of the benefit from integrating MEG and EEG data in minimum l2-norm estimation. NeuroImage, 2008, 42(3): 1069-1077. PMID: 18602485

Prerau MJ, Smith AC, Yanike M, Suzuki WA, Brown EN. A mixed filter algorithm for simultaneously recorded continuous-valued and binary observations. Biological Cybernetics, 2008, 99(1): 1-14. PMID: 18438683

Czanner G, Eden UT, Wirth S, Yanike M, Suzuki WA, Brown EN. Analysis of between-trial and within-trial neural spiking dynamics. Journal of Neurophysiology, 2008, 99: 2672-2693. PMID: 18216233

Napadow V, Dhond R, Conti G, Makris N, Brown EN, Barbieri R. Brain correlates of autonomic modulation: combining heart rate variability with fMRI. NeuroImage, 2008, 42(1): 169-177. PMID: 18524629

Diniz Behn CG, Kopell NK, Brown EN, Mochizuki T, Scammell TE. Delayed orexin signaling consolidates wake and sleep: physiology and modeling. Journal of Neurophysiology, 2008, 99(6):3090-3103. PMID: 18417630

Barbieri, R, Brown EN. Applications of dynamic point process models to cardiovascular control. Biosystems, 2008, April 26 (epub ahead of print). PMID: 18515000

Eden UT, Brown EN. Continuous-time filters for state estimation from point process models of neural data. Statistica Sinica, 2008, 18(4): 1293-1310.

2007
Zhang Q, Brown EN, Strangman GE. Adaptive filtering to reduce global interference in evoked brain activity detection: a human subject case study. Journal of Biomedical Optics, 2007, 12(6):064009. PMID: 18163825

Zhang Q, Brown EN, Strangman GE. Adaptive filtering for global interference cancellation and real time recovery of evoked brain activity: a Monte Carlo simulation study. Journal of Biomedical Optics, 2007, Jul-Aug; 12(4):044014. PMID: 17867818

Srinivasan L, Eden UT, Mitter SK, Brown EN. General purpose filter design for neural prosthetic devices. Journal of Neurophysiology, 2007, 98(4): 2456-2475. PMID: 17522167

Diniz Behn C, Brown EN, Scammell TE, Kopell NJ. A mathematical model of network dynamics governing mouse sleep-wake behavior. Journal of Neurophysiology, 2007, 97(6): 3828-3840. PMID: 17409167

Smith AC, Wirth A, Suzuki W, Brown EN. Bayesian analysis of interleaved learning and response bias in behavioral experiments. Journal of Neurophysiology, 2007, Mar; 97(3):2516-24. PMID: 17182907

Srinivasan L, Brown EN. A state-space framework for movement control to dynamic goals through brain-driven interfaces. IEEE Transactions on Biomedical Engineering, 2007, 54(3):526-535.

Ergun A, Barbieri R, Eden UT, Wilson MA, Brown EN. Construction of point process adaptive filter algorithms for neural systems using sequential Monte Carlo methods. IEEE Transactions on Biomedical Engineering, 2007; 54(3):419-428. PMID: 17355053

2006
Karameh FN, Dahleh MA, Brown EN, Massaquoi SG. Modeling the contribution of lamina 5 neuronal and network dynamics to low frequency EEG phenomena. Biological Cybernetics, 2006, 95(4): 289-310. PMID: 16897093

Srinivasan L, Eden UT, Willsky AS, Brown EN. A state-space analysis for reconstruction of goal-directed movements using neural signals. Neural Computation, 2006, 18(10): 2465-2494. PMID: 16907633

Haslinger, R, Ulbert I, Moore C, Brown EN, Devor A. Laminar analysis of the effect of ongoing cortical activity on the stimulus evoked response in rat somatosensory cortex. Journal of Neurophysiology, 2006, 96(3): 1658-63. PMID: 16775200

Frank LM, Brown EN Stanley GB. Hippocampal and cortical place cell plasticity: implications for episodic memory. Hippocampus, 2006,16(9): 775-784. PMID: 16921502

Indic P, Brown EN. Characterizing the amplitude dynamics of the human core-temperature circadian rhythm using a stochastic-dynamical model. Journal of Theoretical Biology, 2006, 239: 499-506. PMID: 16223510

Barbieri R, Brown EN. Analysis of heart beat dynamics by point process adaptive filtering. IEEE Transactions on Biomedical Engineering, 2006, 53(1): 4-12. PMID: 16402597

Lee WCA, Huang H, Feng G, Sanes JR, Brown EN, So PT, Nedivi E. Dynamic remodeling of dendritic arbors in GABAergic interneurons of adult visual cortex. Public Library of Science-Biology, 2006, Feb 4(2):e29. PMID: 16366735

2005

Suzuki WA and Brown EN. Behavioral and neurophysiological analysis of dynamic learning processes. Behavioral and Cognitive Neuroscience Reviews, 2005, 4(2): 67-95.

Law JR, Flanery MA, Wirth S, Yanike M, Suzuki WA, Smith AC, Frank LM, Brown EN, Stark CEL. fMRI activity during the gradual acquisition and expression of paired-associate memory. Journal of Neuroscience, 2005, 25(24): 5720-5729.

Brown EN and Barbieri R. Dynamic Analyses of Neural Representations Using the State-Space Modeling Paradigm. In: Madras B, Von Zastrow M, Colvis C, Rutter J, Shurtleff D, Pollock J. The Cell Biology of Addiction, New York, Cold Spring Harbor Laboratory Press, 2005, p. 415-432.

Brown EN. Theory of Point Processes for Neural Systems. In: Chow CC, Gutkin B, Hansel D, Meunier C, Dalibard J, eds. Methods and Models in Neurophysics. Paris, Elsevier; 2005, Chapter 14, pp. 691-726.

Okatan M, Wilson MA, Brown EN. Analyzing functional connectivity using a network likelihood model of ensemble neural spiking activity. Neural Computation, 2005, 17(9): 1927-1961.

Kass RE, Ventura V, Brown EN. Statistical issues in the analysis of neuronal data. Journal of Neurophysiology, 2005, 94: 8-25.

Barbieri R, Wilson MA, Frank LM, Brown EN. An analysis of hippocampal spatio-temporal representations using a Bayesian algorithm for neural spike train decoding, IEEE Transactions on Neural Systems & Rehabilitation Engineering, 2005, 13(2): 131-136.

Smith AC, Stefani MR, Moghaddam B, Brown EN. Analysis and design of behavioral experiments to characterize population learning. Journal of Neurophysiology (published on line Sept. 29, 2004), 2005, 93: 1776-1792.

Barbieri R, Matten EC, Alabi, A. Brown EN. A point process model of human heart beat intervals: new definitions of heart rate and heart rate variability, American Journal of Physiology: Heart and Circulatory Physiology (published on line Sept 16, 2004), 2005, 288: H424-H435.

Truccolo W, Eden U, Fellow M, Donoghue JD, Brown EN. A point process framework for relating neural spiking activity to spiking history, neural ensemble and covariate effects. Journal of Neurophysiology, (published online Sept. 8, 2004), 2005, 93: 1074-1089.

Long CL, Brown EN, Triantafyllou C, Aharon I, Wald L, Solo V. Nonstationary noise estimation in functional MRI. Neuroimage (published online August 29, 2005), 2005, 28(4): 890-903.

Indic P, Forger DB, St. Hilaire MA, Dean DA, Brown EN, Kronauer RE, Klerman EB, Jewett ME. Comparison of amplitude recovery dynamics of two limit cycle oscillator models of the human circadian pacemaker. Chronobiology International, 2005, 22(4): 613-629.

2004
Frank, LM, Stanley GB, Brown EN. Hippocampal plasticity across multiple days of exposure to novel environments. Journal of Neuroscience, 2004, 24(35): 7681-89. PMID: 15342735

Brown EN, Kass RE, Mitra PP, Multiple neural spike train data analysis: state-of-the-art and future challenges, Nature Neuroscience, 2004, 7(5): 456-61.

Eden UT, Frank LM, Barbieri R, Solo V, Brown EN, Dynamic analyses of neural encoding by point process adaptive filtering, Neural Computation, 2004, 16(5): 971-998. PMID: 15070506

Barbieri R, Frank LM, Nguyen DP, Quirk MC, Solo V, Wilson MA, Brown EN, Dynamic analyses of information encoding by neural ensembles. Neural Computation, 2004, 16(2): 277-307. PMID: 15006097

Smith AC, Frank LM, Wirth S, Yanike M, Hu D, Kubota Y, Graybiel AM, Suzuki W, Brown EN. Dynamic analysis of learning in behavioral experiments, Journal of Neuroscience, 2004, 15: 965-91. PMID: 14724243

Long CL, Brown EN, Manoach D, Solo V. Spatio-temporal wavelet analysis for functional MRI. NeuroImage, 2004, 23(2): 500-16. PMID: 15488399

Brown EN, Solo V, Choe Y, Zhang Z. Measuring the period of the human biological clock. In: Brand L, Johnson ML, eds. Methods in Enzymology, Numerical Computer Methods, Vol. 383, Orlando, Academic Press, 2004, pp. 383-405.

2003
Wirth S, Yanike M. Frank LM, Smith AC, Brown EN, Suzuki WA. Single neurons in the monkey hippocampus and learning of new associations. Science 2003, 300: 1578-81. PMID: 12791995

Brown EN, Barbieri R, Eden UT, Frank LM. Likelihood methods for neural data analysis. In: Feng J, ed. Computational Neuroscience: A Comprehensive Approach, London: CRC, 2003, pp. 253-86.

Nguyen D, Frank LM, Brown EN. An application of reversible-jump MCMC to spike classification of multiunit extracellular recordings. Network: Computation in Neural Systems 2003; 14: 61-82. PMID: 12617059

Smith AC, Brown EN. Estimating a state-space model from point process observations. Neural Computation. 2003; 15: 965-91. PMID: 12803953

Klerman EB, Adler GK, Jin M, Maliszewski AM, Brown EN. A statistical model of diurnal variation in human growth hormone. American Journal of Physiology 2003, E1118-26. PMID: 12888486

2002
Frank LM, Brown EN, Wilson MA. Entorhinal place cells: trajectory encoding. In: Sharp P ed. Neural Basis for Navigation: Evidence from Single Cell Recordings, San Diego, Kluwer, 2002; pp. 97-116.

Frank LM, Eden UT, Solo V, Wilson MA, Brown EN. Contrasting patterns of receptive field plasticity in the hippocampus and the entorhinal cortex: an adaptive filtering approach. Journal of Neuroscience 2002; 22: 3817-30. PMID: 11978857

Brown EN, Barbieri R, Ventura V, Kass RE, Frank LM. The time-rescaling theorem and its application to neural spike data analysis. Neural Computation 2002. 14(2): 325-46. PMID: 11802915

Bonmassar G, Purdon PL, Jaaskelainen IP, Chiappa K, Solo V, Brown EN, Belliveau JW. Motion and ballistocardiogram artifact removal for interleaved recording of EEG and EPs during MRI. NeuroImage. 2002, 16(4): 1127-42. PMID: 12202099

2001
Brown EN, Nguyen DP, Frank LM, Wilson MA, Solo V. An analysis of neural receptive field plasticity by point process adaptive filtering. Proceedings of the National Academy of Sciences 2001; 98: 12261-12266. PMID: 11593043

Frank LM, Brown EN, Wilson MA. A comparison of the firing properties of putative excitatory and inhibitory neurons from CA1 and the entorhinal cortex of the awake behaving rat. Journal of Neurophysiology 2001. Oct; 86(4): 2029-40. PMID: 11600659

Barbieri R, Quirk MC, Frank LM, Wilson MA, Brown EN. Construction and analysis of non-Poisson stimulus response models of neural spike train activity. Journal of Neuroscience Methods 2001; 105: 25-37. PMID: 11166363

Solo V, Purdon P, Weisskoff R, Brown EN. A signal estimation approach to functional MRI. IEEE Transactions in Medical Imaging 2001, 20: 26-35. PMID: 11293689

Purdon PL, Solo V, Weisskoff RM, Brown EN. Locally regularized spatio-temporal modeling and model comparison for functional MRI. NeuroImage 2001, 14(4): 912-23. PMID: 11554810

Brown EN, Meehan PM, Dempster AP. A stochastic differential equation model of diurnal cortisol patterns. American Journal of Physiology 2001, 280: E450-E461. PMID: 11171600

2000
Frank LM, Brown EN, Wilson MA. Trajectory encoding in the hippocampus and entorhinal cortex. Neuron 2000; 27: 169-178. PMID: 10939340

Brown EN, Choe Y, Luithardt H, Czeisler CA. A statistical model of the human core- temperature circadian rhythm. American Journal of Physiology, 2000, 279: E669-E683. PMID: 10950837

1989-1999
Czeisler CA, Duffy JF, Shanahan TL, Brown EN, Mitchell JF, Rimmer DW, Ronda JM, Silva E, Allan JS, Emens JS, Dijk DJ, Kronauer RE. Age-independent stability, precision, and near 24 hour period of the human circadian pacemaker. Science 1999, 284: 2177-2181. PMID: 10381883

Brown EN, Frank LM, Tang D, Quirk MC, Wilson MA. A statistical paradigm for neural spike train decoding applied to position prediction from ensemble firing patterns of rat hippocampal place cells, Journal of Neuroscience 1998; 18: 7411-7425. PMID: 9736661

Brown EN, Choe Y, Czeisler CA, Shanahan TL. A mathematical model of diurnal variation in plasma melatonin levels. American Journal of Physiology, (Endocrinology and Metabolism 35) 1997, 272: E506-E16. PMID: 9124558

Brown EN, McDermott T, Bloch KJ, McCollom AD. Defining the smallest analyte concentration an immunoassay can measure. Clinical Chemistry 1996, 42: 893-903. PMID: 8665681

Brown EN, Czeisler CA. The statistical analysis of circadian phase and amplitude in constant routine core-temperature data. Journal of Biological Rhythms 1992; 7: 177-202. PMID: 1421473

Czeisler CA, Dumont M, Duffy JF, Steinberg JD, Richardson GS, Brown EN, Sanchez R, Rios CD, Ronda JM. Association of sleep-wake habits in older people with changes in output of circadian pacemaker. Lancet 1992, 340: 933-36. PMID: 1357348

Czeisler CA, Johnson MP, Duffy JF, Brown EN, Ronda JM, Kronauer RE. Exposure to bright light and darkness to treat physiologic maladaptation to night work. New England Journal of Medicine 1990, 322: 1253-59. PMID: 2325721

Brown EN. A note on the asymptotic distribution of parameter estimates for the harmonic regression model. Biometrika 1990, 77: 653-56.

Czeisler CA, Kronauer RE, Allan JS, Duffy JF, Jewett ME, Brown EN, Ronda JM. Bright light induction of strong (Type 0) resetting of the human circadian pacemaker. Science 1989, 244: 1328-33. PMID: 2734611